Error message

  • Warning: preg_replace_callback(): Requires argument 2, '', to be a valid callback in _views_slideshow_preprocess_views_slideshow() (line 73 of /var/www/sites/all/modules/views_slideshow/theme/views_slideshow.theme.inc).
  • Warning: preg_replace_callback(): Requires argument 2, '', to be a valid callback in _views_slideshow_preprocess_views_slideshow() (line 76 of /var/www/sites/all/modules/views_slideshow/theme/views_slideshow.theme.inc).
  • Warning: preg_replace_callback(): Requires argument 2, '', to be a valid callback in _views_slideshow_preprocess_views_slideshow() (line 76 of /var/www/sites/all/modules/views_slideshow/theme/views_slideshow.theme.inc).
  • Warning: preg_replace_callback(): Requires argument 2, '', to be a valid callback in _views_slideshow_preprocess_views_slideshow() (line 76 of /var/www/sites/all/modules/views_slideshow/theme/views_slideshow.theme.inc).
  • Warning: preg_replace_callback(): Requires argument 2, '', to be a valid callback in _views_slideshow_preprocess_views_slideshow() (line 73 of /var/www/sites/all/modules/views_slideshow/theme/views_slideshow.theme.inc).
  • Warning: preg_replace_callback(): Requires argument 2, '', to be a valid callback in _views_slideshow_preprocess_views_slideshow() (line 73 of /var/www/sites/all/modules/views_slideshow/theme/views_slideshow.theme.inc).
  • Warning: preg_replace_callback(): Requires argument 2, '', to be a valid callback in _views_slideshow_preprocess_views_slideshow() (line 73 of /var/www/sites/all/modules/views_slideshow/theme/views_slideshow.theme.inc).
  • Warning: preg_replace_callback(): Requires argument 2, '', to be a valid callback in _views_slideshow_preprocess_views_slideshow() (line 76 of /var/www/sites/all/modules/views_slideshow/theme/views_slideshow.theme.inc).
  • Warning: preg_replace_callback(): Requires argument 2, '', to be a valid callback in _views_slideshow_preprocess_views_slideshow() (line 76 of /var/www/sites/all/modules/views_slideshow/theme/views_slideshow.theme.inc).
  • Warning: preg_replace_callback(): Requires argument 2, '', to be a valid callback in _views_slideshow_preprocess_views_slideshow() (line 76 of /var/www/sites/all/modules/views_slideshow/theme/views_slideshow.theme.inc).
  • Warning: preg_replace_callback(): Requires argument 2, '', to be a valid callback in _views_slideshow_preprocess_views_slideshow() (line 76 of /var/www/sites/all/modules/views_slideshow/theme/views_slideshow.theme.inc).
  • Warning: preg_replace_callback(): Requires argument 2, '', to be a valid callback in _views_slideshow_preprocess_views_slideshow() (line 76 of /var/www/sites/all/modules/views_slideshow/theme/views_slideshow.theme.inc).
  • Warning: preg_replace_callback(): Requires argument 2, '', to be a valid callback in _views_slideshow_preprocess_views_slideshow() (line 76 of /var/www/sites/all/modules/views_slideshow/theme/views_slideshow.theme.inc).
  • Warning: preg_replace_callback(): Requires argument 2, '', to be a valid callback in _views_slideshow_preprocess_views_slideshow() (line 76 of /var/www/sites/all/modules/views_slideshow/theme/views_slideshow.theme.inc).
  • Warning: preg_replace_callback(): Requires argument 2, '', to be a valid callback in _views_slideshow_preprocess_views_slideshow() (line 76 of /var/www/sites/all/modules/views_slideshow/theme/views_slideshow.theme.inc).
  • Notice: Undefined offset: 1592 in user_node_load() (line 3633 of /var/www/modules/user/user.module).
  • Notice: Trying to get property of non-object in user_node_load() (line 3633 of /var/www/modules/user/user.module).
  • Notice: Undefined offset: 1592 in user_node_load() (line 3634 of /var/www/modules/user/user.module).
  • Notice: Trying to get property of non-object in user_node_load() (line 3634 of /var/www/modules/user/user.module).
  • Notice: Undefined offset: 1592 in user_node_load() (line 3635 of /var/www/modules/user/user.module).
  • Notice: Trying to get property of non-object in user_node_load() (line 3635 of /var/www/modules/user/user.module).

GPU-ClustalW: Using Graphics Hardware to Accelerate Multiple Sequence Alignment

Publication Year: 
2006

Abstract:
Molecular Biologists frequently compute multiple sequence alignments (MSAs) to identify similar regions in protein families. However, aligning hundreds of sequences by popular MSA tools such as ClustalW requires several hours on sequential computers. Due to the rapid growth of biological sequence databases biologists have to compute MSAs in a far shorter time. In this paper we present a new approach to reduce this runtime using graphics processing units (GPUs). To derive an efficient mapping onto this type of architecture, we have reformulated the computationally most expensive part of ClustalW in terms of computer graphics primitives. This results in a high-speed implementation with significant runtime savings on a commodity graphics card.

Institution: 
School of Computer Engineering, Nanyang Technological University Centre for Advanced Media Technology